# package pdb

BackboneHB | Container for hydrogen bond energy between two residues. This only consider hydrogen bonds between backbone N-H and C=O.
HBParams | Container for static variables for backbone hydrogen bond. Some of them come from STRIDE
MyLine |
Pdb | data container for pdb file
PdbAtom | Container for ATOM or HETATM entry of pdb file.
PdbChain | Container of a chain in pdb file
PdbGridParams | Static data container used in generating grid.
PdbModel | Container for a MODEL in pdb file. If there are no MODELs in pdb file, at least one MODEL exists and is used in this program.
PdbResidue | Container of a residue in pdb file. Non-amino acid molecules such as waters, co-factors, lipids are considered as residues.
PdbSecondary | Secondary structure information written in pdb files. Available secondary structure names are listed in `SecondaryType.hx`.
RamaAngle | Torsion angle
RamaAngles | Container for phi and psi angles
RamaParam |
RamaParams | Pramaeters related with Ramachandran plot
ResidueBase | base class for PDB residue (amino acids, water, lipids, ions, ...)
SecondaryType | Static data container defining secondary structure type.
WMHydrogenBond |