# biology/py-biopython - The NetBSD Packages Collection

Python libraries for computational molecular biology

    The Biopython package contains high-quality, reusable modules and
    scripts written in Python to make it as easy as possible to use Python
    for bioinformatics.  The Biopython includes the follwing: the ability
    to parse bioinformatics files into python utilizable data structures,
    including support for the formats such as Blast output, Clustalw,
    FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
    Rebase, UniGene, and SwissProt.

- Source version: `py313-biopython-1.87`
- Maintainer: pkgsrc-users AT NetBSD.org
- Website: https://biopython.org/
- License: biopython
- Package history: cvs, hg, git

## Build dependencies

devel/py-setuptools devel/py-build misc/py-installer pkgtools/mktools pkgtools/cwrappers

## Runtime dependencies

math/py-numpy lang/python313 lang/python313 math/py-numpy

## Binary packages

OS | Architecture | Version
--- | --- | ---
NetBSD 10.0 | aarch64 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64eb | py310-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64eb | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64eb | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | aarch64eb | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | earmv7hf | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | i386 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py310-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | powerpc | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | sparc64 | py310-biopython-1.81.tgz
NetBSD 10.0 | sparc64 | py311-biopython-1.81.tgz
NetBSD 10.0 | sparc64 | py312-biopython-1.81.tgz
NetBSD 10.0 | sparc64 | py39-biopython-1.81.tgz
NetBSD 10.0 | sparc64 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | sparc64 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | sparc64 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | sparc64 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py314-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py311-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py312-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py313-biopython-1.85nb1.tgz
NetBSD 10.0 | x86_64 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64eb | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64eb | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64eb | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64eb | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | aarch64eb | py311-biopython-1.87.tgz
NetBSD 11.0 | aarch64eb | py312-biopython-1.87.tgz
NetBSD 11.0 | aarch64eb | py313-biopython-1.87.tgz
NetBSD 11.0 | aarch64eb | py314-biopython-1.87.tgz
NetBSD 11.0 | earmv6hf | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | earmv6hf | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | i386 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | powerpc | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | powerpc | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | powerpc | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | powerpc | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py314-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py311-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py312-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py313-biopython-1.85nb1.tgz
NetBSD 11.0 | x86_64 | py314-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py311-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py312-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py313-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py314-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py311-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py312-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py313-biopython-1.85nb1.tgz
NetBSD 9.0 | earmv7hf | py314-biopython-1.85nb1.tgz
NetBSD 9.0 | i386 | py311-biopython-1.85nb1.tgz
NetBSD 9.0 | i386 | py312-biopython-1.85nb1.tgz
NetBSD 9.0 | i386 | py313-biopython-1.85nb1.tgz
NetBSD 9.0 | i386 | py314-biopython-1.85nb1.tgz
NetBSD 9.0 | x86_64 | py311-biopython-1.85nb1.tgz
NetBSD 9.0 | x86_64 | py312-biopython-1.85nb1.tgz
NetBSD 9.0 | x86_64 | py313-biopython-1.85nb1.tgz
NetBSD 9.0 | x86_64 | py314-biopython-1.85nb1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

## Available build options

(none)

## Known vulnerabilities

- a open xml-external-entity vulnerability

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.