=> Bootstrap dependency digest>=20010302: found digest-20080510
WARNING: [bsd.prefs.mk] The package py26-mol-0.98nb4 misses DESTDIR support.
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /var/db/pkg/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'.
===> Installing for py26-mol-0.98nb4
=> Generating pre-install file lists
(cd /scratch/biology/py-mol/work/pymol-0.98/ && /usr/bin/env PKGSRC_PYTHON_NO_EGG=defined USETOOLS=no PTHREAD_CFLAGS=\ -pthread\  PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\  DL_LDFLAGS=\ -pthread DL_LIBS= PYTHON=/usr/pkg/bin/python2.6 CC=cc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 CPPFLAGS=-I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/pkg/lib/python2.6/config\ -Wl,-R/usr/pkg/lib/python2.6/config LINKER_RPATH_FLAG=-R PATH=/scratch/biology/py-mol/work/.wrapper/bin:/scratch/biology/py-mol/work/.buildlink/bin:/scratch/biology/py-mol/work/.gcc/bin:/scratch/biology/py-mol/work/.tools/bin:/usr/pkg/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/local/sbin:/usr/local/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/scratch/biology/py-mol/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=man MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 INSTALL_INFO= MAKEINFO=/scratch/biology/py-mol/work/.tools/bin/makeinfo PKG_CONFIG= PKG_CONFIG_LIBDIR=/scratch/biology/py-mol/work/.buildlink/lib/pkgconfig:/scratch/biology/py-mol/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/scratch/biology/py-mol/work/.pkg-config.log PKG_CONFIG_PATH= WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg  /usr/pkg/bin/python2.6 setup.py "install"  -c -O1 )
running install
running build
running build_py
running build_ext
running install_lib
creating /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bond_amber.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/arc.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/protein_amber.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bond_mmff.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bonds.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/brick.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/cc1.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/cex.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/charge.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/cpv.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/dictdb.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/gamess1.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/gms.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/hetatm.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/io.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/lst.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/mae.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/map.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/mass.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/mmd.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/models.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/mol.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/neighbor.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/pdb.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/pkl.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/place.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/protein.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/protein_amber99.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/protein_mmff.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/protein_residues.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/sdf.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/solvate.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/water_amber.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/water_residues.py -> /usr/pkg/lib/python2.6/site-packages/chempy
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/xyz.py -> /usr/pkg/lib/python2.6/site-packages/chempy
creating /usr/pkg/lib/python2.6/site-packages/chempy/bmin
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bmin/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy/bmin
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bmin/commands.py -> /usr/pkg/lib/python2.6/site-packages/chempy/bmin
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bmin/realtime.py -> /usr/pkg/lib/python2.6/site-packages/chempy/bmin
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bmin/state.py -> /usr/pkg/lib/python2.6/site-packages/chempy/bmin
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/bmin/util.py -> /usr/pkg/lib/python2.6/site-packages/chempy/bmin
creating /usr/pkg/lib/python2.6/site-packages/chempy/champ
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/champ/formal_charges.py -> /usr/pkg/lib/python2.6/site-packages/chempy/champ
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/champ/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy/champ
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/champ/amber99.py -> /usr/pkg/lib/python2.6/site-packages/chempy/champ
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/champ/assign.py -> /usr/pkg/lib/python2.6/site-packages/chempy/champ
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/champ/_champ.so -> /usr/pkg/lib/python2.6/site-packages/chempy/champ
creating /usr/pkg/lib/python2.6/site-packages/chempy/fast
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/fast/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy/fast
creating /usr/pkg/lib/python2.6/site-packages/chempy/fragments
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/fragments/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy/fragments
creating /usr/pkg/lib/python2.6/site-packages/chempy/tinker
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/tinker/__init__.py -> /usr/pkg/lib/python2.6/site-packages/chempy/tinker
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/tinker/amber.py -> /usr/pkg/lib/python2.6/site-packages/chempy/tinker
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/tinker/keyword.py -> /usr/pkg/lib/python2.6/site-packages/chempy/tinker
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/tinker/realtime.py -> /usr/pkg/lib/python2.6/site-packages/chempy/tinker
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/chempy/tinker/state.py -> /usr/pkg/lib/python2.6/site-packages/chempy/tinker
creating /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/ColorEditor.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/Demo.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/PMGApp.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/SetEditor.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/Setting.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk
creating /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/startup/apbs_tools.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/startup/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/startup/remote_pdb_load.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup
creating /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/skins/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins
creating /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/normal
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/skins/normal/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/normal
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_tk/skins/normal/builder.py -> /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/normal
creating /usr/pkg/lib/python2.6/site-packages/pmg_wx
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pmg_wx/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pmg_wx
creating /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/commanding.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/callback.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/cgo.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/cmd.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/controlling.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/contrib.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/experimenting.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/creating.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/editing.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/editor.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/invocation.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/exporting.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/externing.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/fitting.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/helping.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/importing.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/m4x.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/menu.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/movie.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/moving.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/parser.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/parsing.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/povray.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/preset.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/querying.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/rpc.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/selecting.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/selector.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/setting.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/shortcut.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/util.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/vfont.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/viewing.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizarding.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/xray.py -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/xwin.py -> /usr/pkg/lib/python2.6/site-packages/pymol
creating /usr/pkg/lib/python2.6/site-packages/pymol/opengl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl
creating /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/glconst.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/_opengl_num.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/_opengl.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/openglutil.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/gl/openglutil_num.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl
creating /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glu/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glu/gluconst.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glu/_glu_num.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glu/_glu.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu
creating /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glut/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glut/glutconst.py -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/opengl/glut/_glut.so -> /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut
creating /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/annotation.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/__init__.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/appearance.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/benchmark.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/charge.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/cleanup.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/demo.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/density.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/distance.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/fedora.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/filter.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/label.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/measurement.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/message.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/mutagenesis.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/pair_fit.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/renaming.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/sculpting.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/wizard/security.py -> /usr/pkg/lib/python2.6/site-packages/pymol/wizard
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/_cmd.so -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/sglite.so -> /usr/pkg/lib/python2.6/site-packages/pymol
copying build/lib.netbsd-5.0_STABLE-amd64-2.6/pymol/ExtensionClass.so -> /usr/pkg/lib/python2.6/site-packages/pymol
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bond_amber.py to bond_amber.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/arc.py to arc.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/protein_amber.py to protein_amber.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bond_mmff.py to bond_mmff.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bonds.py to bonds.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/brick.py to brick.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/cc1.py to cc1.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/cex.py to cex.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/charge.py to charge.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/cpv.py to cpv.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/dictdb.py to dictdb.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/gamess1.py to gamess1.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/gms.py to gms.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/hetatm.py to hetatm.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/io.py to io.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/lst.py to lst.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/mae.py to mae.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/map.py to map.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/mass.py to mass.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/mmd.py to mmd.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/models.py to models.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/mol.py to mol.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/neighbor.py to neighbor.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/pdb.py to pdb.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/pkl.py to pkl.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/place.py to place.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/protein.py to protein.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/protein_amber99.py to protein_amber99.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/protein_mmff.py to protein_mmff.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/protein_residues.py to protein_residues.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/sdf.py to sdf.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/solvate.py to solvate.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/water_amber.py to water_amber.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/water_residues.py to water_residues.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/xyz.py to xyz.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bmin/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bmin/commands.py to commands.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bmin/realtime.py to realtime.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bmin/state.py to state.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/bmin/util.py to util.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/champ/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/champ/amber99.py to amber99.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/champ/assign.py to assign.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.py to __init__.pyc
SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.py', 67, 19, '            ll = as[attrib]\n'))

byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/fragments/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/tinker/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/tinker/amber.py to amber.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/tinker/keyword.py to keyword.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/tinker/realtime.py to realtime.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/chempy/tinker/state.py to state.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/Demo.py to Demo.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/Setting.py to Setting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pmg_wx/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/commanding.py to commanding.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/callback.py to callback.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/cgo.py to cgo.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/cmd.py to cmd.pyc
SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/pymol/cmd.py', 1420, 13, '           as,                 \\\n'))

byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/controlling.py to controlling.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/contrib.py to contrib.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/experimenting.py to experimenting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/creating.py to creating.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/editing.py to editing.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/editor.py to editor.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/invocation.py to invocation.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/exporting.py to exporting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/externing.py to externing.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/fitting.py to fitting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/helping.py to helping.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/importing.py to importing.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/m4x.py to m4x.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/menu.py to menu.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/movie.py to movie.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/moving.py to moving.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/parser.py to parser.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/parsing.py to parsing.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/povray.py to povray.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/preset.py to preset.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/querying.py to querying.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/rpc.py to rpc.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/selecting.py to selecting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/selector.py to selector.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/setting.py to setting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/shortcut.py to shortcut.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/util.py to util.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/vfont.py to vfont.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/viewing.py to viewing.pyc
SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/pymol/viewing.py', 512, 9, '   def as(representation="",selection=""):\n'))

byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizarding.py to wizarding.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/xray.py to xray.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/xwin.py to xwin.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/gl/glconst.py to glconst.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glu/gluconst.py to gluconst.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/opengl/glut/glutconst.py to glutconst.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/annotation.py to annotation.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/__init__.py to __init__.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/appearance.py to appearance.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/benchmark.py to benchmark.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/charge.py to charge.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/cleanup.py to cleanup.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/demo.py to demo.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/density.py to density.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/distance.py to distance.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/fedora.py to fedora.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/filter.py to filter.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/label.py to label.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/measurement.py to measurement.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/message.py to message.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/renaming.py to renaming.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/sculpting.py to sculpting.pyc
byte-compiling /usr/pkg/lib/python2.6/site-packages/pymol/wizard/security.py to security.pyc
writing byte-compilation script '/tmp/tmpRualvr.py'
/usr/pkg/bin/python2.6 -O /tmp/tmpRualvr.py
SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.py', 67, 19, '            ll = as[attrib]\n'))

SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/pymol/cmd.py', 1420, 13, '           as,                 \\\n'))

SyntaxError: ('invalid syntax', ('/usr/pkg/lib/python2.6/site-packages/pymol/viewing.py', 512, 9, '   def as(representation="",selection=""):\n'))

removing /tmp/tmpRualvr.py

 Be sure to run "python setup2.py" after "python setup.py install"
 in order to complete the installation of PyMOL's files.

cd /scratch/biology/py-mol/work/pymol-0.98 && env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\  PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\  DL_LDFLAGS=\ -pthread DL_LIBS= PYTHON=/usr/pkg/bin/python2.6 CC=cc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 CPPFLAGS=-I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python2.6 COMPILER_RPATH_FLAG=-Wl,-R F77=f77 FC=f77 FFLAGS=-O LANG=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/pkg/lib/python2.6/config\ -Wl,-R/usr/pkg/lib/python2.6/config LINKER_RPATH_FLAG=-R PATH=/scratch/biology/py-mol/work/.wrapper/bin:/scratch/biology/py-mol/work/.buildlink/bin:/scratch/biology/py-mol/work/.gcc/bin:/scratch/biology/py-mol/work/.tools/bin:/usr/pkg/bin:/sbin:/usr/sbin:/bin:/usr/bin:/usr/pkg/sbin:/usr/pkg/bin:/usr/X11R7/bin:/usr/X11R6/bin:/usr/local/sbin:/usr/local/bin:/usr/pkg/bin:/usr/pkg/bin PREFIX=/usr/pkg PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/scratch/biology/py-mol/work/.home CPP=cpp LINK_ALL_LIBGCC_HACK= LOCALBASE=/usr/pkg NO_WHOLE_ARCHIVE_FLAG=-Wl,--no-whole-archive WHOLE_ARCHIVE_FLAG=-Wl,--whole-archive X11BASE=/usr/pkg X11PREFIX=/usr/pkg PKGMANDIR=man MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ root\ -g\ wheel\ -m\ 555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ root\ -g\ wheel\ -m\ 444 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ root\ -g\ wheel\ -m\ 755 INSTALL_INFO= MAKEINFO=/scratch/biology/py-mol/work/.tools/bin/makeinfo PKG_CONFIG= PKG_CONFIG_LIBDIR=/scratch/biology/py-mol/work/.buildlink/lib/pkgconfig:/scratch/biology/py-mol/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/scratch/biology/py-mol/work/.pkg-config.log PKG_CONFIG_PATH= WRAPPER_DEBUG=no WRAPPER_UPDATE_CACHE=yes VIEWBASE=/usr/pkg /usr/pkg/bin/python2.6 setup2.py
/usr/pkg/lib/python2.6/site-packages/pymol/pymol_path


Created "pymol.com" which can be used to launch PyMOL.  You may wish to copy
this file into a standard location such as /usr/bin or /usr/local/bin.


/usr/bin/install -c -o root -g wheel -m 555 /scratch/biology/py-mol/work/pymol-0.98/pymol.com /usr/pkg/bin/pymol
=> Automatic manual page handling
=> Generating post-install file lists
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyc'
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyo'
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyc'
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyo'
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyc'
pkg_create: can't stat `/usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyo'
=> Registering installation for py26-mol-0.98nb4
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyc' is in +CONTENTS but not on filesystem!
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyo' is in +CONTENTS but not on filesystem!
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyc' is in +CONTENTS but not on filesystem!
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyo' is in +CONTENTS but not on filesystem!
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyc' is in +CONTENTS but not on filesystem!
pkg_admin: py26-mol-0.98nb4: File `/usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyo' is in +CONTENTS but not on filesystem!
py26-mol-0.98nb4 requires installed package glu-7.4.2nb1
py26-mol-0.98nb4 requires installed package glut-7.4.2nb1
py26-mol-0.98nb4 requires installed package png-1.2.37
py26-mol-0.98nb4 requires installed package py26-Numeric-24.2
py26-mol-0.98nb4 requires installed package py26-Pmw-1.2nb1
py26-mol-0.98nb4 requires installed package py26-Tk-0nb4
py26-mol-0.98nb4 requires installed package tcl-8.4.18
py26-mol-0.98nb4 requires installed package tk-8.4.18nb1
=> Checking file-check results for py26-mol-0.98nb4
ERROR: ************************************************************
ERROR: The following files are in the PLIST but not in /usr/pkg:
ERROR:         /usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyc
ERROR:         /usr/pkg/lib/python2.6/site-packages/chempy/fast/__init__.pyo
ERROR:         /usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyc
ERROR:         /usr/pkg/lib/python2.6/site-packages/pymol/cmd.pyo
ERROR:         /usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyc
ERROR:         /usr/pkg/lib/python2.6/site-packages/pymol/viewing.pyo
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/biology/py-mol
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/biology/py-mol
*** Error code 1

Stop.
make: stopped in /usr/pkgsrc/biology/py-mol
